Integrating the world's high quality expression data -
For more effective
discovery and interpretation
We enable the future of genomic research through precise curation
and advanced analytics of public and private studies
Curated Public Data
NEBION curates and integrates high quality omics datasets from
various public repositories and collections. The entire compendium of
NEBION curated data is fully consistent regarding format, vocabularies
used, and data processing. Improvements in formats or vocabularies are
implemented retrospectively on all existing data.
- Repositories: GEO, ArrayExpress, SRA, dbGAP, etc.
- Collections: TCGA, CCLE, Drug Matrix, CMAP, LINCS, etc.
The focus of this curation is on pharmaceutical and biotech companies,
nutrition and cosmetics, and also applied and fundamental academic
research. Over 200,000 samples (microarrays, RNA-seq) have already
been quality controlled, standardized and precisely described
(annotated), providing a coverage of over 500 tissue/cell types, 1500
cell lines, 700 cancer types, and over 15,000 experimental conditions.
The NEBION curation team has a strong expertise in:
- Oncology and haematology
- Immunology and rheumatology
- Respiratory diseases
- Cardiovascular diseases
- Endocrinology and metabolism
- Neurodegenerative diseases
- Pharmacology and toxicology
For over 10 years, the NEBION plant curation team has assembled,
curated and integrated data from a wide variety of experimental
contexts and species.
- Model plants: Arabidopsis and Medicago
- Monocot crops: Maize, rice, wheat, barley, sorghum
- Dicot crops: Soybean, tomato, tobacco
- Organs, tissues and cell types
- Genotypes and knock-outs
- Chemical and hormonal treatments
- Biotic and abiotic stresses
- Hormonal treatments
- Stages of development
- Circadian rythm
At present curated data is available for the two model species
Escherichia coli and Saccharomyces cerevisiae.
- Cell cycle studies
- Culture conditions
- Knock-out lines
Need curated public data?
We aim at helping customers benefit maximally from existing public data
to speed up their discovery or validation efforts. As a customer, you
can license either the entire curated content as part of the
GENEVESTIGATOR Enterprise installation, or alternatively license
specific portions of curated data (typically as flat file exports).
Contact us for more
Note: the licensing of content does not pertain
to the original data itself, but to the added value of
cross-study and global data processing, and to the manual verification and enrichment of the
meta-data by our experts.